STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtN_1Multidrug resistance protein MdtN. (346 aa)    
Predicted Functional Partners:
ttgF
Toluene efflux pump outer membrane protein TtgF precursor.
 
 
 0.967
mdtO
Multidrug resistance protein MdtO.
 
  
 0.945
APC13337.1
Hypothetical protein.
       0.787
macB_1
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.723
macB_2
Macrolide export ATP-binding/permease protein MacB.
  
 
 0.723
emrB_1
Multidrug export protein EmrB.
  
 
 0.692
emrB_3
Multidrug export protein EmrB; Belongs to the major facilitator superfamily.
  
 
 0.573
emrB_2
Multidrug export protein EmrB; Belongs to the major facilitator superfamily.
  
 
 0.571
cusC
Cation efflux system protein CusC precursor.
 
 
 0.571
APC10196.1
DoxX.
  
     0.521
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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