STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13344.1PAAR motif protein. (87 aa)    
Predicted Functional Partners:
APC13338.1
Phage-related baseplate assembly protein.
 
   
 0.876
APC13342.1
Sel1 repeat protein.
 
     0.809
APC11071.1
Hypothetical protein.
 
  
 0.797
APC11053.1
Hypothetical protein.
 
  
 0.793
APC11072.1
Hypothetical protein.
 
  
 0.792
APC11051.1
Type VI secretion lipoprotein.
 
  
 0.787
APC13341.1
Sel1 repeat protein.
 
     0.786
APC11058.1
Hypothetical protein; Intracellular multiplication and human macrophage-killing.
 
   
 0.781
APC13343.1
Sel1 repeat protein.
 
     0.781
APC13340.1
Cardiolipin synthase 2.
 
     0.777
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.