STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
elaBHypothetical protein. (101 aa)    
Predicted Functional Partners:
yqjE
Inner membrane protein YqjE.
 
  
 0.983
APC13357.1
Hypothetical protein.
 
    0.953
APC10055.1
Hypothetical protein.
 
    0.935
ynfD
Hypothetical protein.
  
    0.655
dps
DNA protection during starvation protein; Belongs to the Dps family.
  
    0.645
osmY_1
Osmotically-inducible protein Y precursor.
  
    0.641
slyB
Outer membrane lipoprotein SlyB precursor.
  
    0.587
APC12068.1
Hypothetical protein.
  
     0.576
APC13961.1
Hypothetical protein.
  
     0.532
osmY_2
Osmotically-inducible protein Y precursor.
 
    0.531
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.