STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allS_4HTH-type transcriptional activator AllS; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
yhaK
Pirin-like protein YhaK; Belongs to the pirin family.
 
 
 
 0.665
APC13357.1
Hypothetical protein.
  
     0.663
APC12079.1
Hypothetical protein.
  
     0.651
holE
DNA polymerase III subunit theta.
  
     0.596
cynR_2
HTH-type transcriptional regulator CynR; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.516
APC12453.1
Enhanced serine sensitivity protein SseB.
  
     0.512
ymoA
Modulating protein YmoA.
  
     0.503
ydgH
Hypothetical protein.
  
     0.500
gltR_2
HTH-type transcriptional regulator GltR; Belongs to the LysR transcriptional regulatory family.
  
     0.467
bhsA
Multiple stress resistance protein BhsA precursor.
  
     0.450
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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