Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
APC13373.1Hypothetical protein; Belongs to the UPF0102 family. (124 aa)    
Predicted Functional Partners:
lpoA
Penicillin-binding protein activator LpoA precursor.
 
  
 0.793
APC09979.1
DNA utilization protein GntX.
 
    0.716
comM
Competence protein ComM.
 
  
 0.631
osmY_3
Osmotically-inducible protein Y precursor.
       0.610
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.608
diaA
DnaA initiator-associating protein DiaA.
  
    0.604
APC11004.1
ComEC family competence protein.
  
    0.538
dprA
Hypothetical protein.
 
  
 0.518
APC13374.1
Hypothetical protein.
       0.500
tsaB
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
 
     0.419
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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