Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC13410.1Low molecular weight phosphotyrosine protein phosphatase. (106 aa)    
Predicted Functional Partners:
APC13409.1
Hypothetical protein.
       0.805
APC13411.1
Hypothetical protein.
       0.594
APC10225.1
Putative nucleotidyltransferase.
  
     0.554
yqiK
Inner membrane protein YqiK.
  
     0.474
yjgA
Hypothetical protein; Belongs to the UPF0307 family.
       0.463
APC11246.1
HD domain protein.
  
     0.462
APC09735.1
ATPase involved in DNA repair.
  
     0.444
APC11502.1
Hypothetical protein.
  
     0.418
APC13165.1
Hypothetical protein.
  
     0.407
rtcB_1
RNA-splicing ligase RtcB.
 
     0.401
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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