STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13433.1Hypothetical protein. (80 aa)    
Predicted Functional Partners:
panF
Sodium/pantothenate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.946
APC12397.1
Hypothetical protein.
  
     0.771
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
    0.736
priC
Primosomal replication protein N''.
  
     0.707
yecM
Hypothetical protein.
  
     0.705
ybgE
Hypothetical protein.
  
     0.702
APC10351.1
Hypothetical protein.
  
     0.680
APC10944.1
Putative bacterial sensory transduction regulator.
  
     0.667
yciS
Inner membrane protein YciS; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.660
APC13793.1
Opacity-associated protein A LysM-like domain protein.
  
     0.654
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.