STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13438.1Anaerobic benzoate catabolism transcriptional regulator. (112 aa)    
Predicted Functional Partners:
smfA_3
Fimbria A protein precursor.
       0.538
APC12555.1
Hypothetical protein.
  
     0.523
rmtB
16S rRNA (guanine(1405)-N(7))-methyltransferase.
  
     0.489
APC11904.1
Ferredoxin.
  
     0.467
APC11880.1
Acetyltransferase (GNAT) family protein.
  
     0.464
APC12939.1
Fibronectin type III protein.
  
     0.431
papH_4
PAP fimbrial minor pilin protein precursor.
       0.415
APC11822.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
  
     0.409
APC11431.1
Transposase DDE domain protein.
  
     0.407
fimA_2
Type-1 fimbrial protein, A chain precursor.
  
     0.406
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.