STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smfA_4Fimbria A protein precursor. (203 aa)    
Predicted Functional Partners:
APC13444.1
Hypothetical protein.
       0.730
APC13445.1
Hypothetical protein.
       0.719
papD_5
Chaperone protein PapD precursor.
  
   0.706
APC13446.1
Hypothetical protein.
       0.704
APC13447.1
Hypothetical protein.
       0.702
mrpA_5
Major MR/P fimbria protein precursor.
       0.647
sfaS
S-fimbrial adhesin protein SfaS precursor.
   
   0.581
APC13449.1
Hypothetical protein.
       0.552
papC_5
Outer membrane usher protein PapC precursor.
  
   0.528
sfaH
S-fimbrial protein subunit SfaH.
  
 
 0.511
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.