STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjdCHTH-type transcriptional regulator YjdC. (192 aa)    
Predicted Functional Partners:
tomB
Hha toxicity modulator TomB.
  
     0.773
APC12219.1
Hypothetical protein.
  
     0.772
APC12268.1
Hypothetical protein.
  
     0.770
yhjK
Biofilm formation regulator HmsP.
  
   
 0.763
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.760
qseG
Quorum-sensing regulator protein G precursor.
  
     0.754
uspB
Universal stress protein B.
  
     0.753
APC12068.1
Hypothetical protein.
  
     0.753
APC11970.1
Hypothetical protein; DNA replication terminus site-binding protein.
  
     0.746
APC12091.1
Hypothetical protein.
  
     0.743
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.