STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smfA_5Fimbria A protein precursor. (185 aa)    
Predicted Functional Partners:
papC_6
Outer membrane usher protein PapC precursor.
 
   0.912
papD_6
Chaperone protein PapD precursor.
 
   0.900
papD_7
Chaperone protein PapD precursor.
  
   0.836
papD_5
Chaperone protein PapD precursor.
  
   0.835
papC_5
Outer membrane usher protein PapC precursor.
  
   0.832
papD_8
Chaperone protein PapD precursor.
  
   0.829
papC_3
Outer membrane usher protein PapC precursor.
  
   0.828
papD_3
Chaperone protein PapD precursor.
  
   0.828
papC_8
Outer membrane usher protein PapC precursor.
  
   0.827
papC_4
Outer membrane usher protein PapC precursor.
  
   0.824
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.