Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
APC13559.14-pyridoxolactonase. (267 aa)    
Predicted Functional Partners:
APC13560.1
Hypothetical protein.
 
     0.952
APC13561.1
PAP2 superfamily protein.
 
   
 0.940
APC13558.1
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase.
     0.917
fabH_2
3-oxoacyl-[acyl-carrier-protein] synthase 3.
 
  
 0.864
APC13563.1
Fatty acid desaturase.
 
    0.859
APC13562.1
Fatty acid hydroxylase superfamily protein.
 
     0.842
APC12949.1
Hypothetical protein.
  
     0.650
benM_2
HTH-type transcriptional regulator BenM.
  
    0.606
APC12977.1
DNA N-6-adenine-methyltransferase (Dam).
  
     0.531
ramA_2
(R)-stereoselective amidase.
       0.443
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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