STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13559.14-pyridoxolactonase. (267 aa)    
Predicted Functional Partners:
APC13560.1
Hypothetical protein.
 
     0.949
APC13561.1
PAP2 superfamily protein.
 
     0.935
APC13558.1
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase.
     0.917
fabH_2
3-oxoacyl-[acyl-carrier-protein] synthase 3.
 
  
 0.858
APC13563.1
Fatty acid desaturase.
 
    0.848
APC13562.1
Fatty acid hydroxylase superfamily protein.
 
     0.832
APC12949.1
Hypothetical protein.
  
     0.650
benM_2
HTH-type transcriptional regulator BenM.
  
    0.606
APC12977.1
DNA N-6-adenine-methyltransferase (Dam).
  
     0.531
ramA_2
(R)-stereoselective amidase.
       0.446
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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