STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araDL-ribulose-5-phosphate 4-epimerase. (232 aa)    
Predicted Functional Partners:
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE.
  
 0.992
xylB
Xylulose kinase.
 
 
 0.939
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.911
uxaC
Uronate isomerase.
  
  
 0.843
ulaA_2
Ascorbate-specific permease IIC component UlaA.
 
  
 0.758
sgbH
3-keto-L-gulonate-6-phosphate decarboxylase SgbH.
 
  
 0.732
ulaG
Putative L-ascorbate-6-phosphate lactonase UlaG.
 
   
 0.728
citF
Citrate lyase alpha chain.
   
  
 0.683
araB_1
Ribulokinase.
  
 
 0.682
citE
Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.
   
    0.656
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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