STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alsCD-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family. (344 aa)    
Predicted Functional Partners:
rbsC_3
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.981
mglA
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.972
lsrB
Autoinducer 2-binding protein LsrB precursor.
 
 
 0.943
rbsB_1
D-ribose-binding periplasmic protein precursor.
 
 0.901
rbsB_2
D-ribose-binding periplasmic protein precursor.
 
 0.901
rbsA_1
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.898
rbsA_2
Ribose import ATP-binding protein RbsA.
 
 
 0.898
rbsD
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.897
lyx_3
L-xylulose/3-keto-L-gulonate kinase; Belongs to the FGGY kinase family.
 
  
 0.755
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE.
       0.714
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.