STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyx_3L-xylulose/3-keto-L-gulonate kinase; Belongs to the FGGY kinase family. (490 aa)    
Predicted Functional Partners:
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE.
 
 
 0.982
sgbH
3-keto-L-gulonate-6-phosphate decarboxylase SgbH.
 
  
 0.921
lyx_2
L-xylulose/3-keto-L-gulonate kinase.
  
  
 
0.918
ulaG
Putative L-ascorbate-6-phosphate lactonase UlaG.
 
  
  0.915
lyx_1
L-xylulose/3-keto-L-gulonate kinase.
  
  
 
0.909
alsC
D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.755
lsrB
Autoinducer 2-binding protein LsrB precursor.
 
  
 0.718
mglA
Galactose/methyl galactoside import ATP-binding protein MglA.
  
  
 0.688
rbsC_3
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.681
glpK_1
Glycerol kinase; Belongs to the FGGY kinase family.
  
   
 0.676
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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