STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13579.1Xylose isomerase-like TIM barrel. (249 aa)    
Predicted Functional Partners:
kdgK_3
2-dehydro-3-deoxygluconokinase.
  
 0.979
ttuB_2
Putative tartrate transporter.
 
    0.885
ghrB
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
    0.800
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
  
  
 0.744
iolB
5-deoxy-glucuronate isomerase.
  
  
 0.700
iolC
5-dehydro-2-deoxygluconokinase.
  
  
 0.696
xylB
Xylulose kinase.
 
 
 0.603
yceM
Putative oxidoreductase YceM.
  
  
 0.590
afr
1,5-anhydro-D-fructose reductase.
  
  
 0.590
ydgJ
Putative oxidoreductase YdgJ.
  
  
 0.590
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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