STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutR_2HTH-type transcriptional regulator LutR. (256 aa)    
Predicted Functional Partners:
oppD_4
Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family.
 
     0.847
hbpA
Heme-binding protein A precursor.
 
     0.789
pepA_1
Glutamyl aminopeptidase.
       0.778
gsiC_3
Glutathione transport system permease protein GsiC.
 
     0.746
lutR_3
HTH-type transcriptional regulator LutR.
  
     0.710
oppF_4
Oligopeptide transport ATP-binding protein OppF.
       0.703
lutR_1
HTH-type transcriptional regulator LutR.
  
  
 0.671
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
    0.562
pdhR_1
Pyruvate dehydrogenase complex repressor.
  
     0.541
APC13593.1
Hypothetical protein.
       0.404
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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