Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
oppD_4Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family. (597 aa)    
Predicted Functional Partners:
gsiC_3
Glutathione transport system permease protein GsiC.
 
 
 0.996
oppF_4
Oligopeptide transport ATP-binding protein OppF.
 
0.995
hbpA
Heme-binding protein A precursor.
 
 
 0.988
dppB
Dipeptide transport system permease protein DppB.
 
 
 0.977
oppB
Oligopeptide transport system permease protein OppB.
 
 
 0.977
gsiC_2
Glutathione transport system permease protein GsiC.
 
 
 0.972
gsiC_1
Glutathione transport system permease protein GsiC.
 
 
 0.971
oppF_1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
0.949
dppA_2
Periplasmic dipeptide transport protein precursor.
 
 
 0.904
dppA_1
Periplasmic dipeptide transport protein precursor.
 
 
 0.898
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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