STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potA_3Spermidine/putrescine import ATP-binding protein PotA. (245 aa)    
Predicted Functional Partners:
pgtC
Phosphoglycerate transport regulatory protein PgtC precursor.
 
 
  0.967
phnV_1
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
  
  0.951
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
  
 
 
0.910
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD; Belongs to the ABC transporter superfamily.
 
    
0.886
cysT_2
Sulfate transport system permease protein CysT.
 
 
  0.855
fbpA
Fe(3+)-binding periplasmic protein precursor.
 
 
  0.844
lolE
Lipoprotein-releasing system transmembrane protein LolE.
  
 
 0.723
lolC
Lipoprotein-releasing system transmembrane protein LolC.
  
 
 0.723
lolA
Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.638
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.610
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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