STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13670.1Transcriptional regulatory protein, C terminal. (273 aa)    
Predicted Functional Partners:
APC13671.1
Hypothetical protein.
       0.773
APC13482.1
YhhN-like protein.
  
     0.708
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.694
ttrC
Tetrathionate reductase subunit C.
  
     0.612
hspQ
Heat shock protein HspQ; Involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress; Belongs to the HspQ family.
  
     0.565
APC13991.1
Hypothetical protein.
  
    0.562
ttrA
Tetrathionate reductase subunit A precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.501
lpp
Major outer membrane lipoprotein Lpp precursor.
  
     0.486
ttrS
Tetrathionate sensor histidine kinase TtrS.
  
    0.480
ccmL
Carbon dioxide concentrating mechanism protein CcmL.
  
     0.446
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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