STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
intS_5Putative prophage CPS-53 integrase; Belongs to the 'phage' integrase family. (68 aa)    
Predicted Functional Partners:
intA_3
Prophage CP4-57 integrase; Belongs to the 'phage' integrase family.
 
     0.878
intS_1
Putative prophage CPS-53 integrase; Belongs to the 'phage' integrase family.
  
     0.728
intA_1
Prophage CP4-57 integrase; Belongs to the 'phage' integrase family.
  
     0.714
intS_3
Putative prophage CPS-53 integrase.
  
     0.711
intS_2
Putative prophage CPS-53 integrase; Belongs to the 'phage' integrase family.
  
     0.681
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
   
  
 0.619
APC13692.1
Type I restriction enzyme EcoKI subunit R.
 
    0.568
intA_2
Prophage CP4-57 integrase; Belongs to the 'phage' integrase family.
  
     0.567
tnpA
Putative transposase.
      
 0.422
folP_2
Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
      
 0.422
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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