Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ampHD-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH precursor. (407 aa)    
Predicted Functional Partners:
bssS
Biofilm regulator BssS.
  
     0.687
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.664
APC12453.1
Enhanced serine sensitivity protein SseB.
  
     0.654
APC11576.1
Hypothetical protein.
  
     0.640
APC10051.1
D-alanyl-D-alanine carboxypeptidase precursor.
  
     0.630
ymoA
Modulating protein YmoA.
  
     0.614
APC13480.1
Hypothetical protein.
  
     0.597
APC10050.1
Peptidase M16 inactive domain protein.
  
    0.584
sgrR
HTH-type transcriptional regulator SgrR.
  
     0.569
holE
DNA polymerase III subunit theta.
  
     0.536
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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