STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
actP_2Copper-transporting P-type ATPase. (834 aa)    
Predicted Functional Partners:
APC13712.1
Heavy-metal-associated domain protein.
 
 
 0.835
APC13710.1
Glutaredoxin.
 
 
 
 0.717
copA
Copper-exporting P-type ATPase A.
 
 
0.679
hmrR
HTH-type transcriptional regulator HmrR.
 
  
 0.673
mdtE
Multidrug resistance protein MdtE precursor.
  
  
 0.453
bepE_2
Efflux pump membrane transporter BepE.
     
 0.444
merR1
Mercuric resistance operon regulatory protein.
 
  
 0.412
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.