STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13733.1SCP-2 sterol transfer family protein. (174 aa)    
Predicted Functional Partners:
APC13735.1
Peptidase family U32.
 
  
 0.937
APC13732.1
Acetyltransferase (GNAT) family protein.
  
  
 0.897
yhbU_2
Putative protease YhbU precursor.
 
  
 0.847
yhbU_1
Putative protease YhbU precursor.
 
  
 0.587
narX_2
Nitrate/nitrite sensor protein NarX.
 
     0.577
narX_1
Nitrate/nitrite sensor protein NarX.
 
     0.567
APC11727.1
Coproporphyrinogen III oxidase.
 
     0.504
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.