STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhS_2-2ABC-2 family transporter protein. (384 aa)    
Predicted Functional Partners:
mdtN_2
Multidrug resistance protein MdtN.
 
    0.946
ybhS_2
Inner membrane transport permease YbhS.
 
   
0.857
ybhS_1
Inner membrane transport permease YbhS.
 
    0.523
ybhR
Inner membrane transport permease YbhR.
 
    0.488
APC12555.1
Hypothetical protein.
  
     0.464
APC10529.1
Hypothetical protein.
 
 
   0.454
ptrA_1
Protease 3 precursor.
  
 
   0.439
emrK_2
Putative multidrug resistance protein EmrK.
 
    0.438
mdtN_1
Multidrug resistance protein MdtN.
 
    0.437
APC12369.1
Aromatic amino acid exporter.
 
 
   0.431
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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