Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybhS_2Inner membrane transport permease YbhS. (381 aa)    
Predicted Functional Partners:
mdtN_2
Multidrug resistance protein MdtN.
 
  
 0.952
ybhS_2-2
ABC-2 family transporter protein.
 
   
0.860
emrK_3
Putative multidrug resistance protein EmrK.
 
  
 0.720
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.647
ydjA
Putative NAD(P)H nitroreductase YdjA.
  
  
 0.582
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.580
emrK_2
Putative multidrug resistance protein EmrK.
 
  
 0.440
APC13088.1
Bacterial regulatory protein, tetR family.
  
     0.437
APC12369.1
Aromatic amino acid exporter.
  
     0.432
ycaO
Ribosomal protein S12 methylthiotransferase accessory factor YcaO.
  
  
 0.410
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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