STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtN_2Multidrug resistance protein MdtN. (323 aa)    
Predicted Functional Partners:
ybhS_2
Inner membrane transport permease YbhS.
 
  
 0.949
ybhS_2-2
ABC-2 family transporter protein.
 
    0.946
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.755
macB_1
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.723
tolC
Outer membrane protein TolC precursor.
 
 
 0.601
arpC
Antibiotic efflux pump outer membrane protein ArpC precursor.
 
 
 0.559
ttgF
Toluene efflux pump outer membrane protein TtgF precursor.
 
 
 0.549
mdtE
Multidrug resistance protein MdtE precursor.
 
     0.547
acrB_2
Multidrug efflux pump subunit AcrB.
 
   
 0.507
bepE_1
Efflux pump membrane transporter BepE; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.503
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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