Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
APC13766.1Mu DNA-binding domain protein. (120 aa)    
Predicted Functional Partners:
APC12696.1
Hypothetical protein.
  
     0.680
APC13088.1
Bacterial regulatory protein, tetR family.
  
     0.621
APC09919.1
Type III secretion system protein SpaO.
  
     0.617
priC
Primosomal replication protein N''.
  
     0.605
mlaB
Putative phospholipid ABC transporter-binding protein MlaB.
  
     0.553
APC12045.1
Putative DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.541
APC13510.1
Hypothetical protein.
  
     0.541
APC12831.1
Hypothetical protein.
  
     0.533
APC14003.1
Bacteriophage replication gene A protein (GPA).
 
    0.526
APC13767.1
Mu DNA-binding domain protein.
 
    
0.523
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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