STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13767.1Mu DNA-binding domain protein. (115 aa)    
Predicted Functional Partners:
APC12696.1
Hypothetical protein.
  
     0.734
priC
Primosomal replication protein N''.
  
     0.708
APC13088.1
Bacterial regulatory protein, tetR family.
  
     0.703
APC12272.1
Type I restriction enzyme EcoKI subunit R.
   
    0.600
APC13691.1
Hypothetical protein.
   
    0.600
yhjK
Biofilm formation regulator HmsP.
  
     0.582
mlaB
Putative phospholipid ABC transporter-binding protein MlaB.
  
     0.573
APC13510.1
Hypothetical protein.
  
     0.572
atpI
ATP synthase protein I.
  
     0.571
APC13768.1
DNA-binding transcriptional regulator Nlp.
 
     0.551
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.