Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC13768.1DNA-binding transcriptional regulator Nlp. (90 aa)    
Predicted Functional Partners:
ydgH
Hypothetical protein.
  
     0.725
mlaB
Putative phospholipid ABC transporter-binding protein MlaB.
  
     0.681
ymoA
Modulating protein YmoA.
  
     0.632
holE
DNA polymerase III subunit theta.
  
     0.628
APC12453.1
Enhanced serine sensitivity protein SseB.
  
     0.623
APC13480.1
Hypothetical protein.
  
     0.603
APC10460.1
Hypothetical protein.
  
     0.592
APC12079.1
Hypothetical protein.
  
     0.570
APC13510.1
Hypothetical protein.
  
     0.564
APC13767.1
Mu DNA-binding domain protein.
 
     0.546
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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