Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
atsA_2Arylsulfatase precursor. (575 aa)    
Predicted Functional Partners:
APC12830.1
Arylsulfatase.
 
  
 
0.932
atsB
Anaerobic sulfatase-maturating enzyme.
 
    0.929
APC13429.1
Arylsulfatase.
  
     0.721
APC13327.1
Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM.
 
    0.698
APC13427.1
Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM.
 
    0.689
chuR
Anaerobic sulfatase-maturating enzyme.
 
    0.678
APC13771.1
Hypothetical protein.
       0.522
APC12662.1
Low-density lipoprotein receptor repeat class B.
  
     0.508
pkn1
Serine/threonine-protein kinase pkn1.
 
   0.474
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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