STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytfPGamma-glutamylcyclotransferase family protein YtfP. (115 aa)    
Predicted Functional Partners:
tamA
Translocation and assembly module TamA precursor.
 
   
 0.851
tamB
Translocation and assembly module TamB.
 
     0.836
ybgE
Hypothetical protein.
  
     0.721
atpI
ATP synthase protein I.
  
     0.720
yhjK
Biofilm formation regulator HmsP.
  
     0.720
bamA_2
Outer membrane protein assembly factor BamA precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.
 
   
 0.699
APC12068.1
Hypothetical protein.
  
     0.682
APC10351.1
Hypothetical protein.
  
     0.670
APC13793.1
Opacity-associated protein A LysM-like domain protein.
  
     0.670
yqjE
Inner membrane protein YqjE.
  
     0.654
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.