STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mscMMiniconductance mechanosensitive channel MscM precursor. (1113 aa)    
Predicted Functional Partners:
APC13816.1
Hypothetical protein.
       0.773
psd
Phosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.733
ompD
Outer membrane porin protein OmpD precursor; Belongs to the Gram-negative porin family.
  
   
 0.729
lpp
Major outer membrane lipoprotein Lpp precursor.
  
     0.694
wecF
4-alpha-L-fucosyltransferase; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
 
 
   0.642
ymoA
Modulating protein YmoA.
  
     0.634
yeeX
Hypothetical protein; Belongs to the UPF0265 family.
  
     0.610
yhcB
Inner membrane protein YhcB.
  
     0.606
holE
DNA polymerase III subunit theta.
  
     0.605
pssA
CDP-diacylglycerol--serine O-phosphatidyltransferase.
 
  
 0.578
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.