Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cbh_2Choloylglycine hydrolase. (354 aa)    
Predicted Functional Partners:
APC12751.1
Penicillin acylase precursor.
  
     0.763
mdtO
Multidrug resistance protein MdtO.
 
     0.592
APC11904.1
Ferredoxin.
  
     0.490
ttgF
Toluene efflux pump outer membrane protein TtgF precursor.
  
     0.477
suhB
Inositol-1-monophosphatase.
      
 0.439
ompW
Outer membrane protein W precursor.
      
 0.430
APC11822.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
  
     0.427
APC12555.1
Hypothetical protein.
  
     0.406
APC10196.1
DoxX.
  
     0.404
APC11431.1
Transposase DDE domain protein.
  
     0.403
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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