STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13977.1Phage tail protein E. (102 aa)    
Predicted Functional Partners:
APC13985.1
Gene 25-like lysozyme.
 
    0.983
APC13989.1
P2 phage tail completion protein R (GpR).
 
    0.983
APC13994.1
Phage head completion protein (GPL).
 
    0.983
APC13996.1
Phage major capsid protein, P2 family.
 
    0.983
APC13997.1
Phage capsid scaffolding protein (GPO) serine peptidase.
 
    0.983
APC13998.1
Terminase-like family protein.
 
    0.983
APC13975.1
Phage P2 GpU.
 
    0.968
APC13979.1
Phage tail sheath protein.
 
    0.968
APC13995.1
Phage small terminase subunit.
 
    0.967
APC13978.1
Phage tail tube protein FII.
 
    0.966
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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