Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
APC13979.1Phage tail sheath protein. (390 aa)    
Predicted Functional Partners:
APC13978.1
Phage tail tube protein FII.
 
 
 0.999
APC13983.1
Phage tail protein (Tail_P2_I).
 
 
 0.998
APC13985.1
Gene 25-like lysozyme.
 
 
 0.998
APC13984.1
Baseplate J-like protein.
 
 
 0.996
APC13993.1
Phage Tail Protein X.
 
 
 0.996
APC13974.1
Phage late control gene D protein (GPD).
 
 
 0.994
APC13986.1
Phage-related baseplate assembly protein.
 
 
 0.991
APC11841.1
Phage late control gene D protein (GPD).
 
 
 0.990
APC13975.1
Phage P2 GpU.
 
 
 0.989
APC13982.1
Hypothetical protein.
 
  
 0.988
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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