STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC13981.1Caudovirales tail fiber assembly protein. (214 aa)    
Predicted Functional Partners:
APC13982.1
Hypothetical protein.
 
    0.852
APC13983.1
Phage tail protein (Tail_P2_I).
 
    0.824
APC13984.1
Baseplate J-like protein.
  
    0.793
APC13985.1
Gene 25-like lysozyme.
  
    0.792
APC13986.1
Phage-related baseplate assembly protein.
  
    0.786
APC13987.1
Hypothetical protein.
       0.773
APC10026.1
AsmA family protein.
  
     0.700
uspA
Universal stress protein A.
  
    0.699
ompD
Outer membrane porin protein OmpD precursor; Belongs to the Gram-negative porin family.
  
     0.683
holD
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.665
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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