Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC13990.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
APC13988.1
Phage virion morphogenesis family protein.
       0.773
APC13989.1
P2 phage tail completion protein R (GpR).
       0.773
APC13994.1
Phage head completion protein (GPL).
       0.671
APC13991.1
Hypothetical protein.
       0.668
APC13992.1
Hypothetical protein.
       0.668
APC13993.1
Phage Tail Protein X.
       0.668
APC13981.1
Caudovirales tail fiber assembly protein.
       0.543
APC13982.1
Hypothetical protein.
       0.543
APC13983.1
Phage tail protein (Tail_P2_I).
       0.543
APC13984.1
Baseplate J-like protein.
       0.543
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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