Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC14006.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
dam_2
DNA adenine methylase.
  
    0.780
APC14003.1
Bacteriophage replication gene A protein (GPA).
       0.773
APC14004.1
Hypothetical protein.
       0.773
APC14007.1
Hypothetical protein.
       0.773
APC14008.1
Hypothetical protein.
       0.773
soj
Sporulation initiation inhibitor protein Soj.
  
 
 0.622
parA
Chromosome partitioning protein ParA.
  
 
 0.622
rsmG
Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.593
APC14009.1
Hypothetical protein.
       0.578
APC14002.1
Hypothetical protein.
       0.428
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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