STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC14007.1Hypothetical protein. (73 aa)    
Predicted Functional Partners:
APC14003.1
Bacteriophage replication gene A protein (GPA).
 
    0.925
APC14004.1
Hypothetical protein.
  
    0.902
APC13989.1
P2 phage tail completion protein R (GpR).
 
    0.845
APC14009.1
Hypothetical protein.
  
    0.840
APC13996.1
Phage major capsid protein, P2 family.
 
    0.831
APC13997.1
Phage capsid scaffolding protein (GPO) serine peptidase.
 
    0.827
APC13994.1
Phage head completion protein (GPL).
 
    0.811
dam_2
DNA adenine methylase.
  
    0.800
APC13977.1
Phage tail protein E.
  
    0.791
APC11839.1
Phage P2 GpU.
  
    0.790
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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