STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_7Tyrosine recombinase XerD. (323 aa)    
Predicted Functional Partners:
xerD_1
Tyrosine recombinase XerD.
  
   
 0.744
xerC_1
Tyrosine recombinase XerC.
  
   
 0.705
APC14003.1
Bacteriophage replication gene A protein (GPA).
 
    0.611
APC14012.1
Hypothetical protein.
       0.578
APC13998.1
Terminase-like family protein.
  
    0.565
APC13997.1
Phage capsid scaffolding protein (GPO) serine peptidase.
  
    0.563
APC11834.1
Phage portal protein.
  
    0.557
APC14007.1
Hypothetical protein.
 
    0.556
APC13999.1
Phage portal protein.
  
    0.549
APC13996.1
Phage major capsid protein, P2 family.
  
    0.495
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.