Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xerD_7Tyrosine recombinase XerD. (323 aa)    
Predicted Functional Partners:
xerD_1
Tyrosine recombinase XerD.
  
   
 0.760
xerC_1
Tyrosine recombinase XerC.
  
   
 0.710
APC14003.1
Bacteriophage replication gene A protein (GPA).
 
  
 0.649
APC13997.1
Phage capsid scaffolding protein (GPO) serine peptidase.
  
    0.608
APC13998.1
Terminase-like family protein.
  
    0.608
APC11834.1
Phage portal protein.
  
    0.594
APC14007.1
Hypothetical protein.
 
    0.591
APC13999.1
Phage portal protein.
  
    0.587
APC14012.1
Hypothetical protein.
       0.578
APC13996.1
Phage major capsid protein, P2 family.
  
    0.546
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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