Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpxASensor protein CpxA. (456 aa)    
Predicted Functional Partners:
yycF
Transcriptional regulatory protein YycF.
 
 0.999
baeR
Transcriptional regulatory protein BaeR.
 
 
 0.947
nlpE
Lipoprotein NlpE precursor.
     
 0.927
arcB_2
Aerobic respiration control sensor protein ArcB.
 
 
0.927
kdpE
KDP operon transcriptional regulatory protein KdpE.
 
 
 0.909
phoP
Virulence transcriptional regulatory protein PhoP.
 
 
 0.851
cpxP
Periplasmic protein CpxP precursor.
 
   
 0.828
ompR
Transcriptional regulatory protein OmpR.
 
 
 0.820
arcA
Aerobic respiration control protein ArcA.
 
 
 0.801
tolC
Outer membrane protein TolC precursor.
  
   
 0.796
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.