STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC14023.1LicD family protein. (276 aa)    
Predicted Functional Partners:
APC14022.1
Polysaccharide biosynthesis protein.
 
   
 0.821
cobD
Threonine-phosphate decarboxylase.
 
   
 0.755
pglH
GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase.
       0.746
rfbX
Putative O-antigen transporter.
 
   
 0.724
APC14018.1
NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain.
 
     0.721
APC14025.1
Hypothetical protein.
       0.711
wbbD_2
UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-galactosyltransferase.
 
   
 0.657
APC14020.1
ParB-like nuclease domain protein.
       0.613
epsH
Putative glycosyltransferase EpsH.
     
 0.611
galE_3
UDP-glucose 4-epimerase.
       0.568
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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