STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaGLipopolysaccharide core biosynthesis protein RfaG. (374 aa)    
Predicted Functional Partners:
rfaP
Lipopolysaccharide core heptose(I) kinase RfaP.
 
 
 0.989
rfaQ
Lipopolysaccharide core heptosyltransferase RfaQ.
 
  
 0.956
gspA_3
General stress protein A.
 
  
 0.871
gspA_2
General stress protein A.
 
  
 0.848
rfaF
ADP-heptose--LPS heptosyltransferase 2.
 
 
 0.786
eptC
Phosphoethanolamine transferase EptC.
  
     0.749
rfaC
Lipopolysaccharide heptosyltransferase 1.
 
  
 0.658
pglH
GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase.
 
  
 0.657
cbpM
Chaperone modulatory protein CbpM.
  
     0.525
gspA_1
General stress protein A.
 
  
 0.520
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.