STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuAMannonate dehydratase. (395 aa)    
Predicted Functional Partners:
uxaC
Uronate isomerase.
 
  
 0.987
por_3
Polyol:NADP oxidoreductase.
 
 
 0.982
uxaA_1
Altronate dehydratase.
 
 
 0.971
uxaA_2
Altronate dehydratase.
 
 
 0.964
por_1
Polyol:NADP oxidoreductase.
 
 
 0.958
kduD_2
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
 
 
 0.933
kdgK_1
2-dehydro-3-deoxygluconokinase.
 
  
 0.905
kdgK_3
2-dehydro-3-deoxygluconokinase.
 
  
 0.848
ywlF
Putative sugar phosphate isomerase YwlF.
   
 
  0.819
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.800
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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