Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
uxuAMannonate dehydratase. (395 aa)    
Predicted Functional Partners:
uxaC
Uronate isomerase.
 
  
 0.987
por_3
Polyol:NADP oxidoreductase.
 
 
 0.982
uxaA_1
Altronate dehydratase.
 
 
 0.971
uxaA_2
Altronate dehydratase.
 
 
 0.964
por_1
Polyol:NADP oxidoreductase.
 
 
 0.957
kduD_2
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
 
 
 0.926
kdgK_1
2-dehydro-3-deoxygluconokinase.
 
  
 0.918
kdgK_3
2-dehydro-3-deoxygluconokinase.
 
  
 0.844
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
 0.817
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.805
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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