Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SER67662.1 | SER67698.1 | SAMN05216199_0858 | SAMN05216199_0859 | Nitrogen regulatory protein P-II family. | Ammonium transporter. | 0.999 |
SER67662.1 | SER89475.1 | SAMN05216199_0858 | SAMN05216199_1358 | Nitrogen regulatory protein P-II family. | Glutamine synthetase. | 0.860 |
SER67662.1 | SES40077.1 | SAMN05216199_0858 | SAMN05216199_3341 | Nitrogen regulatory protein P-II family. | Glutamate synthase (NADH) large subunit. | 0.846 |
SER67662.1 | SES49563.1 | SAMN05216199_0858 | SAMN05216199_0419 | Nitrogen regulatory protein P-II family. | Glutamine synthetase. | 0.786 |
SER67662.1 | ffh | SAMN05216199_0858 | SAMN05216199_0856 | Nitrogen regulatory protein P-II family. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.652 |
SER67662.1 | ftsY | SAMN05216199_0858 | SAMN05216199_0861 | Nitrogen regulatory protein P-II family. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.607 |
SER67662.1 | glnD | SAMN05216199_0858 | SAMN05216199_0857 | Nitrogen regulatory protein P-II family. | UTP--GlnB (protein PII) uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.999 |
SER67662.1 | guaA | SAMN05216199_0858 | SAMN05216199_4051 | Nitrogen regulatory protein P-II family. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.457 |
SER67662.1 | nadE | SAMN05216199_0858 | SAMN05216199_0416 | Nitrogen regulatory protein P-II family. | NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.672 |
SER67698.1 | SER67662.1 | SAMN05216199_0859 | SAMN05216199_0858 | Ammonium transporter. | Nitrogen regulatory protein P-II family. | 0.999 |
SER67698.1 | SER89475.1 | SAMN05216199_0859 | SAMN05216199_1358 | Ammonium transporter. | Glutamine synthetase. | 0.793 |
SER67698.1 | SER93631.1 | SAMN05216199_0859 | SAMN05216199_1490 | Ammonium transporter. | Aconitate hydratase. | 0.524 |
SER67698.1 | SES40077.1 | SAMN05216199_0859 | SAMN05216199_3341 | Ammonium transporter. | Glutamate synthase (NADH) large subunit. | 0.917 |
SER67698.1 | SES49563.1 | SAMN05216199_0859 | SAMN05216199_0419 | Ammonium transporter. | Glutamine synthetase. | 0.719 |
SER67698.1 | ffh | SAMN05216199_0859 | SAMN05216199_0856 | Ammonium transporter. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.695 |
SER67698.1 | ftsY | SAMN05216199_0859 | SAMN05216199_0861 | Ammonium transporter. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.583 |
SER67698.1 | glnD | SAMN05216199_0859 | SAMN05216199_0857 | Ammonium transporter. | UTP--GlnB (protein PII) uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.962 |
SER67698.1 | guaA | SAMN05216199_0859 | SAMN05216199_4051 | Ammonium transporter. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.504 |
SER67698.1 | nadE | SAMN05216199_0859 | SAMN05216199_0416 | Ammonium transporter. | NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.554 |
SER89475.1 | SER67662.1 | SAMN05216199_1358 | SAMN05216199_0858 | Glutamine synthetase. | Nitrogen regulatory protein P-II family. | 0.860 |
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