STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER75815.1Transcriptional regulator, HxlR family. (235 aa)    
Predicted Functional Partners:
SER62565.1
NAD-dependent protein deacetylase, SIR2 family.
  
    0.840
SES07613.1
DNA-binding transcriptional regulator, MarR family.
   
    0.818
SES39258.1
Transcriptional regulator.
   
    0.813
SES47583.1
PhnB protein.
   
    0.797
SES14342.1
PemK-like, MazF-like toxin of type II toxin-antitoxin system; Manually curated.
   
    0.726
SES27435.1
Transcriptional attenuator, LytR family.
   
    0.683
SES43126.1
Transcriptional attenuator, LytR family.
   
    0.683
SES23647.1
Transcriptional regulator, GntR family.
   
    0.552
SES36068.1
DNA-binding transcriptional regulator YhcF, GntR family.
   
    0.552
SES15206.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
   
  
 0.541
Your Current Organism:
Phycicoccus cremeus
NCBI taxonomy Id: 587636
Other names: CGMCC 1.6963, JCM 17739, NBRC 104261, P. cremeus, Phycicoccus cremeus Zhang et al. 2011, Phycicoccus sp. V2M29, strain V2M29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.