STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER78393.1Vancomycin resistance protein YoaR, contains peptidoglycan-binding and VanW domains. (562 aa)    
Predicted Functional Partners:
SER78446.1
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase; Belongs to the MshB deacetylase family.
       0.708
SER78419.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
       0.692
SER78500.1
GTP-binding protein.
       0.685
SER78473.1
Peptide/nickel transport system substrate-binding protein.
       0.624
SER78529.1
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
       0.402
Your Current Organism:
Phycicoccus cremeus
NCBI taxonomy Id: 587636
Other names: CGMCC 1.6963, JCM 17739, NBRC 104261, P. cremeus, Phycicoccus cremeus Zhang et al. 2011, Phycicoccus sp. V2M29, strain V2M29
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