STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES07483.1Protein N-acetyltransferase, RimJ/RimL family. (203 aa)    
Predicted Functional Partners:
SES42696.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.769
SES40077.1
Glutamate synthase (NADH) large subunit.
   
 
 0.734
SES49710.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
    
  0.593
SES07504.1
Acetyltransferase (GNAT) domain-containing protein.
       0.539
SES07461.1
Serine/threonine protein kinase.
       0.535
SES07524.1
Uncharacterized conserved protein YqgV, UPF0045/DUF77 family.
       0.418
rnc
Ribonuclease-3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.408
SER80408.1
Acetyltransferase (GNAT) family protein; Belongs to the Nudix hydrolase family.
  
    0.406
Your Current Organism:
Phycicoccus cremeus
NCBI taxonomy Id: 587636
Other names: CGMCC 1.6963, JCM 17739, NBRC 104261, P. cremeus, Phycicoccus cremeus Zhang et al. 2011, Phycicoccus sp. V2M29, strain V2M29
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