Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKA24659.1Pfam: SnoaL-like polyketide cyclase. (151 aa)    
Predicted Functional Partners:
AKA22896.1
3-beta hydroxysteroid dehydrogenase; Pfam: NADH(P)-binding.
 
    0.556
AKA24660.1
Hypothetical protein.
       0.541
AKA27489.1
Hypothetical protein; Pfam: NADH(P)-binding.
  
    0.444
AKA25780.1
Hypothetical protein; PRINTS: Pertactin virulence factor family signature; SMART: Autotransporter beta-domain; Pfam: Pertactin; TIGRFAM: autotrans_barl: outer membrane autotransporter barrel domain; Pfam: Autotransporter beta-domain.
  
     0.416
AKA24661.1
Pfam: Multicopper oxidase; TIGRFAM: copper_res_A: copper-resistance protein, CopA family; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.
       0.413
AKA24662.1
Pfam: Copper resistance protein B precursor (CopB).
       0.413
Your Current Organism:
Pseudomonas chlororaphis
NCBI taxonomy Id: 587753
Other names: ATCC 9446, Bacillus chlororaphis, CCUG 552 B, CFBP 2132, CIP 63.22, DSM 50083, HAMBI 2011, IFO 3904, JCM 2778, LMG 5004, LMG:5004, NBRC 3904, NCCB 76041, NCIB 9392, NCIMB 9392, NCTC 13002, P. chlororaphis, Pseudomonas sp. UFB2
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